PPDB

PPDB	The Plant Proteome Database

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AT5G58000.1 Reticulon family protein

Lab Annot.

Reticulon protein
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G58000.2 11 Arabidopsis thaliana 0 487 100 100 0 (0) _
AT2G20590.3 11 Arabidopsis thaliana 5E-46 244 37 55 0 (0) C
AT2G20590.1 11 Arabidopsis thaliana 2E-45 244 39 55 0 (0) C
Os08g17870.1 7 Oryza sativa 9E-75 354 39 53 2 (2) M
Os02g19990.2 7 Oryza sativa 2E-39 234 35 55 0 (0) _
Os02g19990.1 7 Oryza sativa 1E-38 234 35 55 0 (0) _
v1_GRMZM2G352132_P01 4a53 Zea mays 1E-87 361 40 57 0 (0) M
GRMZM2G352132_P01 3.21 Zea mays 1E-87 361 40 57 0 (0) M
Zm00001eb177690_P004 agpv5 Zea mays 3E-87 361 40 57 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF4611(3) DUF5090(3) DUF639(1) FAM176(2) PBP1_TM(2) Reticulon(2) RXT2_N(2)
TargetP:	Chloroplast (Class 2 C0.874; M0.090; S0.019; _0.163)
Predotar:
Subcel. Location:
TM-HMM prediction:	3 TMs
Aramemnon:	4 TMs
TAT position:
Length	487 aa (-cTP 465)
Molecular Weight	55.19 kDA(-cTP 52.88)
PI	5.98(-cTP 5.87)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data