PPDB

 The Plant Proteome Database

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AT5G57960.1   GTP-binding protein%2C HflX
Lab Annot. GTPase HFlx (HFLX)
Mapman: 29.2.7* protein.synthesis.ribosome biogenesis
Curated Location plastid stroma (Pubmed: 23198870 18431481 25566271 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G57960.2 11Arabidopsis thaliana038499990 (0)M
AT3G49725.1 11Arabidopsis thaliana1E-4031635520 (0)C
AT5G18570.1 11Arabidopsis thaliana8E-10174324575 (45)C
Os11g38020.1 7Oryza sativa043479900 (0)C
Os03g51790.1 7Oryza sativa2E-2839528410 (0)M
Os07g47300.1 7Oryza sativa3E-09187314425 (25)C
Zm00001eb167660_P002 agpv5Zea mays044976880 (0)C
v1_GRMZM2G027021_P01 4a53Zea mays0449768812 (12)C
GRMZM2G027021_P01 3.21Zea mays0449768879 (20)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ABC_ATPase(1) ABC_tran(2) Arf(1) BCAS2(1) cobW(2) Dynamin_N(2) FeoB_N(1) GTP-bdg
TargetP: Chloroplast (Class 2 C0.861; M0.241; S0.029; _0.046)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 540 aa (-cTP 494)
Molecular Weight 60.53 kDA(-cTP 55.16)
PI 5.76(-cTP 5.25)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
326Detail       leaf [A. thaliana] chloroplast stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
20423899(chloroplast)

Comparative Proteomics Data

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