PPDB

 The Plant Proteome Database

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AT5G57950.1   26S proteasome regulatory subunit
Lab Annot. 26S proteasome regulatory subunit
Mapman: 29.5.11.20.2* protein.degradation.ubiquitin.proteasome.26S
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G57950.2 11Arabidopsis thaliana3E-1662271001000 (0)M
Os09g25310.1 7Oryza sativa1E-7522750685 (5)_
GRMZM2G160770_P01 3.21Zea mays1E-7722851694 (4)_
v1_GRMZM2G160770_P01 4a53Zea mays1E-7722851695 (5)_
Zm00001eb312980_P002 agpv5Zea mays1E-7722851690 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CCDC-167(2) Nas2_N(1) PDZ(1) PDZ_2(1) PDZ_6(1)
TargetP: Cytoplasm (Class 2 C0.126; M0.075; S0.084; _0.785)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 227 aa (-cTP 224)
Molecular Weight 24.26 kDA(-cTP )
PI 5.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
310Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-TAPlong
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
655Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
679Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3 (rep. 2-1)
755Detail        [A. thaliana]  
872Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (1-8); k2k3 (9-10)
1091Detail        [A. thaliana] R4Strep Complemented
1123Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1209Detail       leaf [A. thaliana] total leaf tissue StrepII-tagged Clp transgenic
1213Detail       leaf [A. thaliana] total leaf tissue P3-StrepII complemented
1261Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 1) thylakoid membraneshoot1 (null mutant)
1263Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 2) thylakoid membraneshoot1 (null mutant)
1264Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 3) thylakoid membranewild-type
1265Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 3) thylakoid membraneshoot1 (null mutant)
1331Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1372Detail       Total leaf 5d ML stress [A. thaliana] chloroplast plastoglobulewild-type
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1420Detail        [A. thaliana]  
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1507Detail        [A. thaliana] wild-type
1521Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1536Detail       leaf [A. thaliana] wild-type
1538Detail       leaf [A. thaliana] plastid RNCs thylakoid membranewild-type
1587Detail        [A. thaliana]  
1597Detail        [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1633Detail       leaf [A. thaliana] Stroma stromawild-type
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1681Detail        [A. thaliana] t1-t2xt2-t1
1683Detail        [A. thaliana] t1-t2xt2-t1/T1strepII
1684Detail        [A. thaliana] t1-t2xt2-t1/T2strepII
1689Detail        [A. thaliana] Col-0
1703Detail        [A. thaliana] cGep
1745Detail        [A. thaliana] Col-0
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1909Detail       leaf [A. thaliana] total leaf tissue Col_0
1911Detail       leaf [A. thaliana] total leaf tissue Col_0
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1937Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2129Detail       leaf [A. thaliana] Stroma stromawild-type
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2190Detail        [A. thaliana] plastid stroma stromaP3-strepII 31
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2208Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII
2210Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII st28
2214Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19888209(80S polysomal fraction)
21173025(root proteome)

Comparative Proteomics Data

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