PPDB

 The Plant Proteome Database

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AT5G57930.1   APO RNA-binding protein (DUF794)
Lab Annot. APO2 - model .2 scores better than model 1
Mapman: 29.8 protein.protein assembly and cofactor ligation
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G57930.2 11Arabidopsis thaliana044399992 (0)C
AT1G64810.1 11Arabidopsis thaliana5E-11538145631 (1)_
AT1G64810.2 11Arabidopsis thaliana6E-11538145631 (1)S
Os02g50010.1 7Oryza sativa037066831 (1)C
Os04g52520.1 7Oryza sativa8E-10836147651 (1)_
Os04g52520.3 7Oryza sativa7E-10635647651 (1)_
Zm00001eb190190_P001 agpv5Zea mays040364810 (0)C
v1_GRMZM2G063473_P01 4a53Zea mays0403648112 (12)C
GRMZM2G063473_P01 3.21Zea mays0403648118 (18)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: APO_RNA-bind(2)
TargetP: Chloroplast (Class 1 C0.862; M0.037; S0.017; _0.050)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 440 aa (-cTP 378)
Molecular Weight 49.94 kDA(-cTP 43.00)
PI 9.60(-cTP 9.42)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help