PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G57860.1   Ubiquitin-like superfamily protein
Lab Annot. ubiquitin protein
Mapman: 29.5.11.1 protein.degradation.ubiquitin.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G57860.3 11Arabidopsis thaliana1E-649510010015 (6)_
AT5G57860.2 11Arabidopsis thaliana1E-649510010015 (6)_
AT5G57860.4 11Arabidopsis thaliana2E-4166969811 (4)M
Os03g24920.1 7Oryza sativa4E-357774887 (7)M
GRMZM2G055527_P01 3.21Zea mays4E-4190678615 (15)M
Zm00001eb329210_P001 agpv5Zea mays4E-419067860 (0)M
v1_GRMZM2G055527_P01 4a53Zea mays4E-4190678614 (14)M

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF2407(1) Rad60-SLD(2) ubiquitin(1) Ubiquitin_2(1) Ubiquitin_5(1)
TargetP: Cytoplasm (Class 5 C0.024; M0.558; S0.073; _0.607)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 95 aa (-cTP 71)
Molecular Weight 10.90 kDA(-cTP )
PI 4.53(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help