PPDB

 The Plant Proteome Database

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AT5G57550.1   xyloglucan endotransglucosylase/hydrolase 25
Lab Annot. xyloglucan endotransglycosylase-related protein (XTR3)
Mapman: 10.7 cell wall.modification
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G25810.1 11Arabidopsis thaliana1E-14728467790 (0)S
AT5G57560.1 11Arabidopsis thaliana3E-14728466801 (1)S
AT4G30270.1 11Arabidopsis thaliana4E-139272658194 (58)S
Os06g48200.1 7Oryza sativa2E-14127368800 (0)S
Os06g48180.1 7Oryza sativa3E-12927361760 (0)S
Os06g48160.1 7Oryza sativa8E-12928359743 (3)S
v1_GRMZM2G166944_P01 4a53Zea mays1E-14227169820 (0)S
Zm00001eb226490_P002 agpv5Zea mays1E-14227169820 (0)S
GRMZM2G166944_P01 3.21Zea mays1E-14227169820 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_16(1) XET_C(1)
TargetP: Secreted (Class 2 C0.020; M0.024; S0.953; _0.175)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 284 aa (-cTP 267)
Molecular Weight 32.57 kDA(-cTP )
PI 8.25(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2291Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to seeds)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help