PPDB

The Plant Proteome Database

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AT5G57370.1   U4/U6.U5 small nuclear ribonucleoprotein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g26349.2 7Oryza sativa6E-317771790 (0)_
Os02g26349.1 7Oryza sativa6E-317771790 (0)_
Os06g32150.1 7Oryza sativa5E-296280870 (0)M
Zm00001eb327770_P002 agpv5Zea mays1E-296181880 (0)_
GRMZM2G097593_P02 3.21Zea mays2E-296181880 (0)_
GRMZM2G097593_P01 3.21Zea mays2E-296181880 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SNRNP27(2)
TargetP: Cytoplasm (Class 1 C0.048; M0.101; S0.010; _0.936)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 219 aa (-cTP 156)
Molecular Weight 26.04 kDA(-cTP )
PI 10.97(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21515685(GreenCut2)

Comparative Proteomics Data


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