PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G57160.1 DNA ligase IV

Lab Annot.

ATLIG4 ( DNA LIGASE IV)
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G57160.2 11 Arabidopsis thaliana 0 884 100 100 0 (0) _
AT1G08130.1 11 Arabidopsis thaliana 2E-27 405 28 45 14 (2) C
AT1G49250.1 11 Arabidopsis thaliana 4E-26 387 28 45 0 (0) _
Os04g51700.1 7 Oryza sativa 6E-44 622 27 44 0 (0) M
Os10g34750.1 7 Oryza sativa 2E-29 382 28 46 23 (23) _
Os10g34750.2 7 Oryza sativa 2E-29 382 28 46 23 (23) _
Zm00001eb071490_P001 agpv5 Zea mays 0 1238 53 70 0 (0) M
v1_GRMZM2G390798_P01 4a53 Zea mays 0 610 58 71 0 (0) M
v1_GRMZM2G130883_P01 4a53 Zea mays 3E-34 474 29 45 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BRCT(2) BRCT_2(2) DNA_ligase_A_C(1) DNA_ligase_A_M(1) DNA_ligase_A_N(1) DNA_liga
TargetP:	Cytoplasm (Class 3 C0.190; M0.115; S0.084; _0.598)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1219 aa (-cTP 1196)
Molecular Weight	137.85 kDA(-cTP )
PI	8.24(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18814325(cotyledons)
21533090(plasmodesmata-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)
21515685(GreenCut2)

Comparative Proteomics Data