PPDB

PPDB	The Plant Proteome Database

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AT5G57030.1 Lycopene beta/epsilon cyclase protein

Lab Annot.

LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase
Mapman: 16.1.4.4 secondary metabolism.isoprenoids.carotenoids.lycopene epsilon cyclase

Curated Location

plastid (Pubmed: 23198870 9789087 )

TAIR curated location: chloroplast8837512

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G10230.1 11 Arabidopsis thaliana 5E-87 420 36 56 33 (5) _
AT3G10230.2 11 Arabidopsis thaliana 4E-71 370 35 55 29 (5) _
Os01g39960.1 7 Oryza sativa 0 474 71 82 2 (2) C
Os02g09750.1 7 Oryza sativa 2E-88 423 38 54 28 (28) C
GRMZM2G012966_P03 3.21 Zea mays 0 472 70 82 25 (12) C
Zm00001eb357090_P001 agpv5 Zea mays 0 472 70 82 0 (0) C
v1_GRMZM2G012966_P03 4a53 Zea mays 0 472 70 82 8 (8) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DAO(2) FAD_binding_2(1) FAD_oxidored(1) GIDA(1) HI0933_like(2) Lycopene_cycl(1)
TargetP:	Chloroplast (Class 4 C0.751; M0.442; S0.016; _0.045)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	2 TMs
TAT position:
Length	524 aa (-cTP 479)
Molecular Weight	58.49 kDA(-cTP 53.26)
PI	5.71(-cTP 5.05)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1676	Detail								Rosettes [A. thaliana]
1696	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
1697	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data