PPDB

PPDB	The Plant Proteome Database

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AT5G56900.1 CwfJ-like family protein / zinc finger (CCCH-type) family protein

Lab Annot.

Mapman: 27.3.99 RNA.regulation of transcription.unclassified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G56900.3 11 Arabidopsis thaliana 0 404 100 100 0 (0) M
AT5G56900.2 11 Arabidopsis thaliana 0 404 100 100 6 (0) M
AT1G56290.1 11 Arabidopsis thaliana 5E-16 219 27 47 0 (0) _
Os09g19940.2 7 Oryza sativa 1E-165 408 55 72 0 (0) _
Os09g19940.1 7 Oryza sativa 1E-164 408 55 72 0 (0) C
Os03g52980.1 7 Oryza sativa 2E-14 251 23 44 0 (0) _
Zm00001eb311020_P001 agpv5 Zea mays 1E-159 407 55 70 0 (0) C
GRMZM2G306935_P02 3.21 Zea mays 1E-159 407 55 70 0 (0) C
GRMZM2G306935_P01 3.21 Zea mays 5E-126 349 51 67 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CwfJ_C_1(1) CwfJ_C_2(1) RRM_7(2) Torus(2) zf-CCCH(2) zf-CCCH_2(2) zf_CCCH_4(2)
TargetP:	Cytoplasm (Class 5 C0.056; M0.406; S0.027; _0.603)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	404 aa (-cTP 347)
Molecular Weight	45.69 kDA(-cTP )
PI	7.86(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data