PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G56820.1   F-box/RNI-like/FBD-like domains-containing protein

Lab Annot. F-box/RNI-like/FBD-like domains-containing protein
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G56810.1 11Arabidopsis thaliana6E-11444348620 (0)_
AT5G56810.2 11Arabidopsis thaliana1E-7828951640 (0)_
AT5G56420.1 11Arabidopsis thaliana7E-7043436550 (0)_
Os11g09478.1 7Oryza sativa3E-1325429460 (0)_
Os11g09474.1 7Oryza sativa1E-1234027440 (0)_
Os04g19750.1 7Oryza sativa7E-1249523380 (0)M
v1_GRMZM2G146694_P01 4a53Zea mays4E-1026924430 (0)C
GRMZM2G146694_P01 3.21Zea mays4E-1026924430 (0)C
Zm00001eb082200_P001 agpv5Zea mays5E-1026924430 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: F-box(1) F-box-like(1) FBD(2) LRR_2(1) LRR_4(4)
TargetP: Cytoplasm (Class 2 C0.096; M0.180; S0.051; _0.784)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 435 aa (-cTP 396)
Molecular Weight 50.52 kDA(-cTP )
PI 8.76(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help