PPDB

 The Plant Proteome Database

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AT5G56600.2   profilin
Lab Annot. profilin 5-pollen specific - actin monomer binding- dually targeted to cytosol & nucleus
Mapman: 31.1 cell.organisation
Curated Location cytosol (Pubmed: 11977080 )
nucleus (Pubmed: 11977080 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G56600.1 11Arabidopsis thaliana5E-618710010038 (32)_
AT2G19760.1 11Arabidopsis thaliana3E-48878286243 (177)_
AT4G29350.1 11Arabidopsis thaliana2E-44877581384 (261)_
Os06g05880.1 7Oryza sativa5E-4789788332 (32)_
Os10g17660.1 7Oryza sativa4E-428772810 (0)_
Os10g17680.1 7Oryza sativa4E-428772810 (0)_
GRMZM5G877388_P01 3.21Zea mays3E-4688738436 (32)_
v1_GRMZM2G029148_P04 4a53Zea mays3E-4688738415 (15)_
GRMZM5G877388_P03 3.21Zea mays1E-4587738336 (32)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Profilin(1)
TargetP: Cytoplasm (Class 4 C0.037; M0.140; S0.455; _0.711)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 108 aa (-cTP 24)
Molecular Weight 11.94 kDA(-cTP )
PI 4.72(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2045Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2047Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2050Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2053Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2600Detail       rosettes [A. thaliana] total leaf tissue fmtclpc1
2602Detail       Rosettes [A. thaliana] total leaf tissue clpc1
2603Detail       Rosettes [A. thaliana] total leaf tissue clpc1
2604Detail       Rosettes [A. thaliana] Total leaf tissue clpc1

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help