PPDB

The Plant Proteome Database

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AT5G56590.1   O-Glycosyl hydrolases family 17 protein

Lab Annot. glycosyl hydrolase family 17 protein
Mapman: 35.1 not assigned.no ontology
Curated Location
TAIR curated location: anchored to membrane12068095,12805588
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G29360.2 11Arabidopsis thaliana051456741 (1)S
AT4G29360.1 11Arabidopsis thaliana050457751 (1)S
AT4G26830.1 11Arabidopsis thaliana9E-13145841630 (0)S
Os01g53750.1 7Oryza sativa044169840 (0)S
Os02g53200.2 7Oryza sativa1E-12348040610 (0)S
Os07g38930.1 7Oryza sativa4E-12249138590 (0)S
Zm00001eb153770_P001 agpv5Zea mays047067820 (0)S
v1_GRMZM2G140451_P01 4a53Zea mays047067822 (2)S
GRMZM2G005082_P02 3.21Zea mays047067823 (3)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glyco_hydro_17(1) X8(1)
TargetP: Secreted (Class 1 C0.008; M0.018; S0.954; _0.106)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 506 aa (-cTP 421)
Molecular Weight 55.60 kDA(-cTP )
PI 7.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

14517339(GPI anchored suspension cells)
17644812(plasma membrane - suspension cells)
17526915(glycoproteome cell wall (stems))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)
20843791(DRM-enriched plasmamembrane)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help