PPDB

PPDB	The Plant Proteome Database

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AT5G56530.1 tRNA-splicing ligase (DUF239)

Lab Annot.

Mapman: 29.5 protein.degradation

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G56530.2 11 Arabidopsis thaliana 0 420 100 100 0 (0) M
AT1G55360.1 11 Arabidopsis thaliana 0 419 79 86 0 (0) S
AT3G13510.1 11 Arabidopsis thaliana 0 420 79 87 0 (0) S
Os07g38590.1 7 Oryza sativa 0 378 76 88 2 (2) S
Os07g10530.1 7 Oryza sativa 0 380 75 85 0 (0) S
Os03g59240.1 7 Oryza sativa 0 377 74 86 0 (0) S
GRMZM2G082312_P01 3.21 Zea mays 0 381 73 85 0 (0) S
Zm00001eb061630_P001 agpv5 Zea mays 0 381 73 85 0 (0) S
v1_GRMZM2G082312_P02 4a53 Zea mays 0 381 73 85 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Neprosin(1) Neprosin_AP(1)
TargetP:	Mitochondria (Class 5 C0.003; M0.608; S0.487; _0.020)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	420 aa (-cTP 391)
Molecular Weight	47.23 kDA(-cTP )
PI	6.43(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)

Comparative Proteomics Data