PPDB

PPDB	The Plant Proteome Database

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AT5G56340.1 RING/U-box superfamily protein

Lab Annot.

zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G26400.1 11 Arabidopsis thaliana 1E-133 365 62 73 3 (3) S
AT4G26400.2 11 Arabidopsis thaliana 1E-133 365 62 73 3 (3) S
AT1G55530.1 11 Arabidopsis thaliana 2E-114 392 49 59 0 (0) _
Os05g40980.1 7 Oryza sativa 4E-68 352 39 50 0 (0) _
Os05g40980.2 7 Oryza sativa 3E-59 331 39 50 0 (0) _
Os03g59760.2 7 Oryza sativa 5E-55 192 51 63 0 (0) _
GRMZM2G027120_P02 3.21 Zea mays 1E-68 378 35 50 0 (0) _
GRMZM2G027120_P01 3.21 Zea mays 1E-68 378 35 50 0 (0) _
v1_GRMZM2G027120_P02 4a53 Zea mays 1E-68 378 35 50 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DZR(2) HypA(2) Prok-RING_4(2) Rad50_zn_hook(2) zf-ANAPC11(1) zf-C3HC4(2) zf-C3HC
TargetP:	Cytoplasm (Class 2 C0.032; M0.142; S0.163; _0.784)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	396 aa (-cTP 391)
Molecular Weight	44.36 kDA(-cTP )
PI	5.37(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data