PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G56120.1   RNA polymerase II elongation factor

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G12870.1 11Arabidopsis thaliana2E-3120637590 (0)_
Os08g38790.1 7Oryza sativa2E-3723342540 (0)S
Os03g56700.1 7Oryza sativa2E-2918538560 (0)_
Os08g38760.1 7Oryza sativa8E-2014936490 (0)_
GRMZM2G113196_P01 3.21Zea mays2E-4623342570 (0)_
v1_GRMZM2G113196_P01 4a53Zea mays2E-4623342570 (0)_
Zm00001eb033920_P001 agpv5Zea mays2E-4623342570 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Cytoplasm (Class 3 C0.334; M0.035; S0.113; _0.884)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 236 aa (-cTP 165)
Molecular Weight 27.17 kDA(-cTP )
PI 9.12(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help