PPDB

PPDB	The Plant Proteome Database

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AT5G55970.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G55970.2 11 Arabidopsis thaliana 0 343 100 100 0 (0) C
AT5G55970.3 11 Arabidopsis thaliana 0 295 100 100 0 (0) C
AT4G26580.1 11 Arabidopsis thaliana 5E-180 343 74 86 0 (0) C
Os01g50750.1 7 Oryza sativa 2E-115 294 57 70 0 (0) M
Os02g54624.1 7 Oryza sativa 1E-56 356 32 49 0 (0) _
Os01g08340.1 7 Oryza sativa 3E-54 311 34 52 0 (0) _
Zm00001eb155600_P002 agpv5 Zea mays 2E-107 294 56 70 0 (0) C
v1_GRMZM2G386113_P02 4a53 Zea mays 1E-106 294 56 70 0 (0) _
GRMZM2G386113_P02 3.21 Zea mays 1E-106 294 56 70 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FANCL_C(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1) zf-rbx1(1) zf-R
TargetP:	Chloroplast (Class 1 C0.937; M0.051; S0.017; _0.111)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	4 TMs
Aramemnon:	5 TMs
TAT position:
Length	343 aa (-cTP 265)
Molecular Weight	39.04 kDA(-cTP 30.24)
PI	8.50(-cTP 6.29)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data