PPDB

The Plant Proteome Database

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AT5G55720.1   Pectin lyase-like superfamily protein

Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G13710.1 11Arabidopsis thaliana8E-15635658740 (0)S
AT4G13710.2 11Arabidopsis thaliana2E-15535658740 (0)S
AT3G27400.1 11Arabidopsis thaliana3E-15340154711 (1)S
Os04g05050.2 7Oryza sativa4E-15038056700 (0)_
Os04g05050.1 7Oryza sativa1E-14835759730 (0)S
Os10g31910.1 7Oryza sativa2E-13836454680 (0)S
v1_GRMZM2G412207_P02 4a53Zea mays2E-15135759740 (0)_
GRMZM2G412207_P04 3.21Zea mays9E-15138956710 (0)C
Zm00001eb420010_P001 agpv5Zea mays9E-15138956710 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Beta_helix(1) Pectate_lyase_4(1)
TargetP: Secreted (Class 4 C0.457; M0.049; S0.839; _0.004)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 392 aa (-cTP 349)
Molecular Weight 43.68 kDA(-cTP )
PI 5.08(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help