PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G55670.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G55670.2 11 Arabidopsis thaliana 0 406 100 100 2 (0) _
AT1G13190.1 11 Arabidopsis thaliana 1E-69 706 33 45 1 (1) _
AT3G08000.1 11 Arabidopsis thaliana 5E-07 96 32 53 0 (0) C
Os08g38240.1 7 Oryza sativa 4E-45 125 68 77 0 (0) _
Os09g29980.2 7 Oryza sativa 1E-40 92 76 90 0 (0) _
Os09g29980.1 7 Oryza sativa 1E-40 92 76 90 0 (0) _
v1_GRMZM2G475495_P01 4a53 Zea mays 2E-59 484 44 54 0 (0) _
GRMZM2G475495_P01 3.21 Zea mays 2E-59 484 44 54 0 (0) _
Zm00001eb033690_P001 agpv5 Zea mays 2E-59 484 44 54 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1) RRM_5(1)
TargetP:	Cytoplasm (Class 2 C0.097; M0.131; S0.074; _0.914)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	710 aa (-cTP 690)
Molecular Weight	76.43 kDA(-cTP )
PI	5.32(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data