PPDB

The Plant Proteome Database

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AT5G55660.1   DEK domain-containing chromatin associated protein

Lab Annot. GTP binding / RNA binding
Mapman: 35.2 not assigned.unknown
Curated Location
TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G26630.1 11Arabidopsis thaliana0782586933 (27)_
AT4G26630.2 11Arabidopsis thaliana0782586933 (27)_
AT3G48710.1 11Arabidopsis thaliana4E-5443536542 (2)_
Os01g70020.1 7Oryza sativa2E-43274366118 (18)_
Os03g40010.1 7Oryza sativa1E-14187405828 (28)_
Os03g29960.1 7Oryza sativa9E-067640610 (0)_
Zm00001eb049840_P001 agpv5Zea mays7E-7448538580 (0)_
v1_GRMZM2G375984_P02 4a53Zea mays5E-70531375512 (12)_
v1_GRMZM2G375984_P01 4a53Zea mays5E-70531375512 (12)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DEK_C(1) Sigma70_ner(2)
TargetP: Cytoplasm (Class 2 C0.184; M0.102; S0.107; _0.888)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 778 aa (-cTP 750)
Molecular Weight 87.21 kDA(-cTP )
PI 4.74(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1711Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1713Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1716Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data


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