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AT5G55310.1 DNA topoisomerase 1 beta

Lab Annot.

DNA topoisomerase 1 beta
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G55300.1 11 Arabidopsis thaliana 0 929 64 76 12 (12) _
AT5G55300.2 11 Arabidopsis thaliana 0 926 64 76 12 (12) _
AT5G55300.3 11 Arabidopsis thaliana 7E-158 265 83 91 1 (1) _
Os08g05840.1 7 Oryza sativa 0 950 53 68 3 (3) _
Zm00001eb172650_P001 agpv5 Zea mays 0 793 61 72 0 (0) _
Zm00001eb172650_P004 agpv5 Zea mays 0 793 61 72 0 (0) _
Zm00001eb172650_P003 agpv5 Zea mays 0 821 59 70 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CENP-F_leu_zip(2) Topo_C_assoc(1) Topoisom_I(1) Topoisom_I_N(1)
TargetP:	Cytoplasm (Class 1 C0.081; M0.038; S0.003; _0.941)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	917 aa (-cTP 913)
Molecular Weight	103.05 kDA(-cTP )
PI	9.48(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
622	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
1544	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1xk3
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1557	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt

* For details about the exprimental sources click here.

Published Proteomics Data

17432890(leaf total membranes)
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data