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PPDB	The Plant Proteome Database

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AT5G55300.3 DNA topoisomerase I alpha

Lab Annot.

DNA topoisomerase I alpha
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

PeptideAtlas POGS Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G55300.1 11 Arabidopsis thaliana 0 293 100 100 12 (12) _
AT5G55300.2 11 Arabidopsis thaliana 0 293 100 100 12 (12) _
AT5G55310.1 11 Arabidopsis thaliana 2E-160 271 83 91 4 (4) _
Os08g05840.1 7 Oryza sativa 4E-128 271 69 83 3 (3) _
GRMZM2G092451_P02 3.21 Zea mays 6E-133 271 70 84 8 (6) _
Zm00001eb172650_P001 agpv5 Zea mays 1E-131 271 70 84 0 (0) _
Zm00001eb172650_P004 agpv5 Zea mays 1E-131 271 70 84 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Corona_NS2A(1) DivIC(2) DUF4407(2) Med9(2) Myosin_tail_1(1) SlyX(2) Topo_C_assoc
TargetP:	Cytoplasm (Class 3 C0.368; M0.023; S0.001; _0.850)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	564 aa (-cTP 532)
Molecular Weight	62.49 kDA(-cTP )
PI	8.94(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt

* For details about the exprimental sources click here.

Published Proteomics Data

20733066(phosphoproteome-ABA-leaf)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data