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PPDB	The Plant Proteome Database

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AT5G55300.1 DNA topoisomerase I alpha

Lab Annot.

DNA topoisomerase I alpha
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G55300.2 11 Arabidopsis thaliana 0 912 99 99 12 (12) _
AT5G55310.1 11 Arabidopsis thaliana 0 929 65 77 4 (4) _
AT5G55300.3 11 Arabidopsis thaliana 0 293 100 100 1 (1) _
Os08g05840.1 7 Oryza sativa 0 821 58 71 3 (3) _
Zm00001eb172650_P001 agpv5 Zea mays 0 816 58 70 0 (0) _
Zm00001eb172650_P004 agpv5 Zea mays 0 816 58 70 0 (0) _
Zm00001eb172650_P003 agpv5 Zea mays 0 844 56 68 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Corona_NS2A(1) Topo_C_assoc(1) Topoisom_I(1) Topoisom_I_N(1)
TargetP:	Cytoplasm (Class 3 C0.368; M0.023; S0.001; _0.850)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	916 aa (-cTP 884)
Molecular Weight	102.80 kDA(-cTP )
PI	9.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1547	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1548	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1551	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1552	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1555	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1556	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1574	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
1576	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1580	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1581	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1582	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3

* For details about the exprimental sources click here.

Published Proteomics Data

11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
15908592(Carbonylated seed protein)
18599647(seed proteome)
18463617(suspension cells-phosphorylated proteins)
19452453(14-3-3-interacting proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data