PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G55180.1   O-Glycosyl hydrolases family 17 protein
Lab Annot. GH17 (beta-1,3-glucanases)
Mapman: 26.4 misc.beta 1,3 glucan hydrolases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G55180.2 11Arabidopsis thaliana04491001000 (0)S
AT4G26830.1 11Arabidopsis thaliana046277860 (0)S
AT4G26830.2 11Arabidopsis thaliana046175860 (0)S
Os02g53200.2 7Oryza sativa048257720 (0)S
Os02g53200.1 7Oryza sativa046259730 (0)S
Os07g35350.3 7Oryza sativa9E-13446545620 (0)S
v1_GRMZM2G046459_P01 4a53Zea mays5E-179459587311 (11)S
Zm00001eb256330_P001 agpv5Zea mays5E-17945958730 (0)S
GRMZM2G046459_P01 3.21Zea mays5E-17945958730 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_17(1) X8(1)
TargetP: Secreted (Class 2 C0.023; M0.037; S0.859; _0.113)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 460 aa (-cTP 439)
Molecular Weight 49.36 kDA(-cTP )
PI 5.63(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 21413152(Xylem-sap (BrassicaOleracea))
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help