PPDB

 The Plant Proteome Database

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AT5G55160.2   small ubiquitin-like modifier 2
Lab Annot. SUMO-2
Mapman: 29.10* protein.sumoylation
Curated Location cytosol (Pubmed: 12482876 )
nucleus (Pubmed: 12482876 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G55160.1 11Arabidopsis thaliana9E-70116888842 (27)_
AT4G26840.1 11Arabidopsis thaliana1E-52104818234 (16)_
AT5G55170.1 11Arabidopsis thaliana9E-2310545610 (0)_
Os01g68950.1 7Oryza sativa4E-52109777810 (10)_
Os01g68940.1 7Oryza sativa4E-4810874760 (0)_
Os07g38660.1 7Oryza sativa2E-1510041550 (0)_
GRMZM2G082390_P01 3.21Zea mays1E-52106798143 (42)_
GRMZM2G053898_P02 3.21Zea mays1E-52106798143 (42)_
Zm00001eb364660_P001 agpv5Zea mays1E-5210679810 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rad60-SLD(2) ubiquitin(1)
TargetP: Cytoplasm (Class 3 C0.212; M0.236; S0.104; _0.743)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 116 aa (-cTP 68)
Molecular Weight 13.10 kDA(-cTP )
PI 5.13(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2599Detail       Rosettes [A. thaliana] total leaf tissue fmtclpc1
2600Detail       rosettes [A. thaliana] total leaf tissue fmtclpc1
2601Detail       Rosettes [A. thaliana] total leaf tissue fmtclpc1
2602Detail       Rosettes [A. thaliana] total leaf tissue clpc1
2603Detail       Rosettes [A. thaliana] total leaf tissue clpc1
2604Detail       Rosettes [A. thaliana] Total leaf tissue clpc1

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help