PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G55130.1   co-factor for nitrate%2C reductase and xanthine dehydrogenase 5

Lab Annot. co-factor for nitrate, reductase and xanthine dehydrogenase 5
Mapman: 18.1 Co-factor and vitamine metabolism.molybdenum cofactor
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G55130.2 11Arabidopsis thaliana046494941 (1)_
AT5G55130.3 11Arabidopsis thaliana0350991000 (0)_
AT2G21470.2 11Arabidopsis thaliana2E-1716029482 (0)S
Os02g32460.1 7Oryza sativa7E-7622756670 (0)_
Os02g56080.1 7Oryza sativa1E-5120149640 (0)_
Os02g56050.1 7Oryza sativa3E-4617545630 (0)M
v1_GRMZM2G160842_P04 4a53Zea mays047657700 (0)_
GRMZM2G160842_P04 3.21Zea mays047657700 (0)_
Zm00001eb375420_P005 agpv5Zea mays047657700 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: EFhand_Ca_insen(2) Rhodanese(1) Sacchrp_dh_NADP(1) Shikimate_DH(2) ThiF(1)
TargetP: Cytoplasm (Class 2 C0.174; M0.063; S0.050; _0.941)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 464 aa (-cTP 385)
Molecular Weight 50.57 kDA(-cTP )
PI 5.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help