PPDB

 The Plant Proteome Database

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AT5G55070.1   Dihydrolipoamide succinyltransferase
Lab Annot. 2-oxoglutarate dehydrogenase E2 subunit - part of OGDC
Mapman: 8.1 TCA / org.transformation.TCA
Curated Location mitochondria

TAIR curated location: mitochondrion14671022,14764908,12492832
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G55070.2 11Arabidopsis thaliana04641001000 (0)M
AT4G26910.2 11Arabidopsis thaliana0468828666 (31)M
AT4G26910.1 11Arabidopsis thaliana0469828666 (31)M
Os04g32330.2 7Oryza sativa0444707930 (30)M
Os04g32330.1 7Oryza sativa0454697830 (30)M
Os02g31040.1 7Oryza sativa037573820 (0)M
GRMZM2G079538_P01 3.21Zea mays0418728142 (24)S
Zm00001eb421290_P003 agpv5Zea mays041872810 (0)S
v1_GRMZM2G079538_P01 4a53Zea mays0418728133 (32)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 2-oxoacid_dh(1) Biotin_lipoyl(1) Biotin_lipoyl_2(2) GCV_H(1) HlyD_2(2) HlyD_3(2)
TargetP: Mitochondria (Class 4 C0.566; M0.850; S0.003; _0.010)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 464 aa (-cTP 451)
Molecular Weight 50.13 kDA(-cTP )
PI 9.19(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1717Detail        [A. thaliana]  
1718Detail        [A. thaliana]  
1720Detail        [A. thaliana]  
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2122Detail       leaf [A. thaliana] Stroma stromacGep
2128Detail       leaf [A. thaliana] Stroma stromacGep
2160Detail       leaf [A. thaliana] stroma Clp stromaP3-strepII 13
2161Detail       leaf [A. thaliana] stroma Clp stromaP3-strepII 31
2168Detail       leaf [A. thaliana] stroma Clp stromaP3-strepII
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2253Detail       seedlings [A. thaliana] total tissue atg5
2260Detail       leaf [A. thaliana] stroma Clp wild-type
2261Detail       leaf [A. thaliana] stroma Clp clp trap
2262Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2307Detail        [A. thaliana] Clp C1 TRAP
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2315Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
15276431(Mitochondrial proteome)
15821981(crude&pure 80S ribosome)
16618929(MITO/PLASTID-LOPIT-callus)
15276431(mitochondrial membranes-suspension cells)
14764908(mitochondria-suspension cells)
18385124(mitochondria - leaf and suspension cell)
18385124(mitochondria)
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20018591(Zn2+ binding (mitochondria - cell culture))
19114538(guard cells Arabidopsis leaf)
21311031(mitochondria)
21325567(root-proteome (wt & det3))
21173025(root proteome)
21296373(mitochondria-root-leaf-differential)
22430844(Golgi-cell-culture)
21472856(mitochondrial-2DEgels-uncurated)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

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