PPDB

PPDB	The Plant Proteome Database

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AT5G54910.1 DEA(D/H)-box RNA helicase family protein

Lab Annot.

DEAD box RNA helicase (RH32)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G18600.1 11 Arabidopsis thaliana 2E-102 446 40 59 13 (10) _
AT5G65900.1 11 Arabidopsis thaliana 3E-102 446 40 60 0 (0) _
AT1G71370.1 11 Arabidopsis thaliana 6E-69 452 35 54 0 (0) _
Os07g33340.1 7 Oryza sativa 0 775 49 67 0 (0) M
Os03g58810.1 7 Oryza sativa 4E-95 450 37 58 0 (0) C
Os01g07080.2 7 Oryza sativa 2E-68 477 35 52 0 (0) C
v1_GRMZM2G125935_P01 4a53 Zea mays 0 751 49 68 12 (12) M
Zm00001eb106050_P001 agpv5 Zea mays 0 751 49 68 0 (0) M
GRMZM2G125935_P01 3.21 Zea mays 0 751 49 68 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DASH_Spc19(1) DEAD(2) DUF1168(1) DUF4217(1) Helicase_C(1) KR(1) ResIII(2)
TargetP:	Cytoplasm (Class 2 C0.080; M0.143; S0.051; _0.833)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	739 aa (-cTP 660)
Molecular Weight	83.58 kDA(-cTP )
PI	9.15(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data