PPDB

PPDB	The Plant Proteome Database

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AT5G54900.1 RNA-binding protein 45A

Lab Annot.

RNA-binding protein 45A
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G27000.1 11 Arabidopsis thaliana 9E-168 322 76 86 14 (11) _
AT1G11650.2 11 Arabidopsis thaliana 3E-141 325 63 76 120 (51) _
AT1G11650.1 11 Arabidopsis thaliana 1E-122 257 65 80 100 (48) _
Os03g37270.1 7 Oryza sativa 2E-148 332 66 78 22 (22) _
Os03g37270.2 6 Oryza sativa 2E-148 332 66 78 11 (11) _
Os08g09100.1 7 Oryza sativa 4E-132 332 61 73 14 (14) _
Zm00001eb219820_P001 agpv5 Zea mays 4E-143 332 68 80 0 (0) M
GRMZM2G002874_P01 3.21 Zea mays 4E-143 332 68 80 27 (26) M
Zm00001eb219820_P002 agpv5 Zea mays 4E-141 324 66 79 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nup35_RRM_2(1) PhageP22-tail(1) RRM_1(3) RRM_3(2) RRM_5(3) RRM_7(3) RRM_occluded
TargetP:	Mitochondria (Class 5 C0.135; M0.539; S0.032; _0.447)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	387 aa (-cTP 350)
Molecular Weight	42.32 kDA(-cTP )
PI	6.09(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
17216043(leaf)
19672695(oligo(dT) mRNA-binding proteins (cell culture))
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data