PPDB

The Plant Proteome Database

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AT5G54580.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. ORRM2 (editing factor)
Mapman: 27.1.5* RNA.processing.editing
Curated Location mitochondria (Pubmed: 25800738 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G07750.1 11Arabidopsis thaliana2E-297085870 (0)C
AT2G37510.1 11Arabidopsis thaliana1E-278260740 (0)M
AT1G73530.1 11Arabidopsis thaliana3E-2497476112 (12)C
Os08g04440.1 7Oryza sativa2E-4712963758 (8)C
Os07g36490.1 7Oryza sativa2E-428870882 (2)M
Os08g04440.2 7Oryza sativa6E-3410361758 (8)C
GRMZM2G003897_P01 3.21Zea mays5E-46102728110 (10)M
Zm00001eb416760_P002 agpv5Zea mays5E-4610272810 (0)M
v1_GRMZM2G003897_P01 4a53Zea mays5E-46102728110 (10)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RRM_1(1)
TargetP: Chloroplast (Class 3 C0.674; M0.216; S0.036; _0.014)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 156 aa (-cTP 73)
Molecular Weight 17.09 kDA(-cTP 8.25)
PI 9.77(-cTP 9.06)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1596Detail        [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

21311031(mitochondria)
21472856(mitochondrial-2DEgels-uncurated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help