PPDB

 The Plant Proteome Database

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AT5G54290.1   cytochrome c biogenesis protein family
Lab Annot. CcdA - thiol Disulfide transporter - cytf assembly
Mapman: 29.8 protein.protein assembly and cofactor ligation
Curated Location thylakoid-integral (Pubmed: 23198870 15159384 20214498 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G54290.2 11Arabidopsis thaliana0355999914 (14)M
Os12g04270.1 7Oryza sativa8E-15832273840 (0)C
Os11g04500.1 7Oryza sativa3E-15732273840 (0)C
Os12g04270.2 7Oryza sativa4E-7120262750 (0)C
GRMZM2G424491_P01 3.21Zea mays7E-15530974851 (1)_
Zm00001eb093260_P002 agpv5Zea mays9E-15430974850 (0)C
Zm00001eb093260_P001 agpv5Zea mays1E-15330974850 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DsbD(1)
TargetP: Mitochondria (Class 5 C0.312; M0.409; S0.009; _0.111)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 7 TMs
TAT position:
Length 354 aa (-cTP 333)
Molecular Weight 36.53 kDA(-cTP )
PI 8.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1833Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21515685(GreenCut2)

Comparative Proteomics Data

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