PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G54250.1 cyclic nucleotide-gated cation channel 4

Lab Annot.

cyclic nucleotide-gated cation channel 4
Mapman: 34.22 transport.cyclic nucleotide or calcium regulated channels

Curated Location

TAIR curated location: membrane

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G54250.2 11 Arabidopsis thaliana 0 694 100 100 1 (1) _
AT5G54250.4 11 Arabidopsis thaliana 0 694 100 100 0 (0) _
AT5G54250.3 11 Arabidopsis thaliana 0 694 99 99 0 (0) _
Os01g57370.1 7 Oryza sativa 0 656 64 76 0 (0) C
Os05g42250.1 7 Oryza sativa 0 626 66 77 0 (0) C
Os03g55100.1 7 Oryza sativa 0 619 50 69 0 (0) _
v1_GRMZM2G090528_P01 4a53 Zea mays 0 492 74 85 0 (0) _
Zm00001eb292010_P003 agpv5 Zea mays 0 493 74 84 0 (0) M
v1_GRMZM2G078781_P01 4a53 Zea mays 0 483 74 84 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	cNMP_binding(2) Ion_trans(1) Myc_N(1)
TargetP:	Cytoplasm (Class 3 C0.099; M0.332; S0.085; _0.785)
Predotar:
Subcel. Location:
TM-HMM prediction:	7 TMs
Aramemnon:	7 TMs
TAT position:
Length	694 aa (-cTP 685)
Molecular Weight	80.08 kDA(-cTP )
PI	8.20(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1202	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data