PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G54190.1   protochlorophyllide oxidoreductase A
Lab Annot. PORA - down regulated in light; high in Prolamellar body
Mapman: 19.14 tetrapyrrole synthesis.protochlorophyllide reductase
Curated Location thylakoid-peripheral-stromal-side (Pubmed: 23198870 7579182 11478939 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G27440.1 11Arabidopsis thaliana04058693990 (500)C
AT4G27440.2 11Arabidopsis thaliana04058693990 (500)C
AT1G03630.2 11Arabidopsis thaliana04067686633 (331)C
Os10g35370.1 7Oryza sativa0409738465 (65)C
Os04g58200.1 7Oryza sativa0409718047 (47)C
Os04g58200.2 7Oryza sativa0330819147 (47)C
GRMZM2G036455_P01 3.21Zea mays0407758594 (74)C
Zm00001eb044650_P001 agpv5Zea mays040775852 (2)C
v1_GRMZM2G036455_P01 4a53Zea mays0407758559 (59)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: adh_short(2) adh_short_C2(1) Eno-Rase_NADH_b(1) Epimerase(1) Glyco_hydro_31(1) K
TargetP: Chloroplast (Class 1 C0.957; M0.018; S0.003; _0.070)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 405 aa (-cTP 352) (-lTP 292)
Molecular Weight 43.86 kDA(-cTP 38.38)(-lTP 32.15)
PI 9.42(-cTP 9.34)(-lTP 7.262)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
641Detail        [A. thaliana] plastid nucleoid (crude) wild-type
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1643Detail       leaf [A. thaliana] total leaf tissue Wild-type
1719Detail        [A. thaliana]  
1720Detail        [A. thaliana]  
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2120Detail       leaf [A. thaliana] Stroma stromacGep
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2398Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/35SRecA-GFP
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15815986(Leaf)
18814325(cotyledons)
17216043(leaf)
19114538(guard cells Arabidopsis leaf)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help