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AT5G54180.1 plastid transcriptionally active 15

Lab Annot.

PTAC15 -mTERF domain
Mapman: 27.3.99 RNA.regulation of transcription.unclassified

Curated Location

plastid nucleoid (Pubmed: 23198870 16326926 21464319 )

TAIR curated location: plastid chromosome16326926

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G14605.2 11 Arabidopsis thaliana 3E-18 256 28 45 0 (0) C
AT4G14605.1 11 Arabidopsis thaliana 3E-18 256 28 45 7 (5) C
AT2G21710.1 11 Arabidopsis thaliana 2E-16 333 24 46 0 (0) _
Os07g04230.1 7 Oryza sativa 1E-20 338 28 47 0 (0) M
Os02g39040.1 7 Oryza sativa 2E-16 310 27 42 0 (0) C
Os08g40430.1 7 Oryza sativa 3E-15 263 23 49 0 (0) _
Zm00001eb299540_P001 agpv5 Zea mays 2E-21 327 29 48 0 (0) C
Zm00001eb246440_P001 agpv5 Zea mays 2E-15 261 27 45 0 (0) C
v1_GRMZM2G024550_P01 4a53 Zea mays 2E-15 261 27 45 11 (11) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Fe_dep_repr_C(3) mTERF(2)
TargetP:	Chloroplast (Class 2 C0.889; M0.018; S0.137; _0.005)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	500 aa (-cTP 436)
Molecular Weight	56.35 kDA(-cTP 49.33)
PI	7.16(-cTP 6.33)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1416	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.2	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

16326926(nucleoids)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data