PPDB

 The Plant Proteome Database

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AT5G54180.1   plastid transcriptionally active 15
Lab Annot. PTAC15 -mTERF domain
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location plastid nucleoid (Pubmed: 23198870 16326926 21464319 )

TAIR curated location: plastid chromosome16326926
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G14605.2 11Arabidopsis thaliana3E-1825628450 (0)C
AT4G14605.1 11Arabidopsis thaliana3E-1825628457 (6)C
AT2G21710.1 11Arabidopsis thaliana2E-1633324460 (0)_
Os07g04230.1 7Oryza sativa1E-2033828470 (0)M
Os02g39040.1 7Oryza sativa2E-1631027420 (0)C
Os08g40430.1 7Oryza sativa3E-1526323490 (0)_
Zm00001eb299540_P001 agpv5Zea mays2E-2132729480 (0)C
Zm00001eb246440_P001 agpv5Zea mays2E-1526127450 (0)C
v1_GRMZM2G024550_P01 4a53Zea mays2E-15261274511 (11)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Fe_dep_repr_C(3) mTERF(2)
TargetP: Chloroplast (Class 2 C0.889; M0.018; S0.137; _0.005)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 500 aa (-cTP 436)
Molecular Weight 56.35 kDA(-cTP 49.33)
PI 7.16(-cTP 6.33)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2290Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2321Detail       leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

 16326926(nucleoids)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

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