PPDB

PPDB	The Plant Proteome Database

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AT5G53540.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot.

MSP1 protein, putative / intramitochondrial sorting protein, putative
Mapman: 29.5.11 protein.degradation.ubiquitin

Curated Location

not plastid (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G27680.1 11 Arabidopsis thaliana 0 394 80 90 12 (12) S
AT1G02890.1 11 Arabidopsis thaliana 2E-87 275 49 70 0 (0) C
AT4G24860.4 11 Arabidopsis thaliana 8E-87 272 51 69 0 (0) C
Os06g50050.1 7 Oryza sativa 0 392 72 85 21 (21) S
Os06g50050.2 6 Oryza sativa 0 367 74 87 12 (12) S
Os11g43970.1 7 Oryza sativa 8E-86 267 50 70 14 (14) C
Zm00001eb227980_P001 agpv5 Zea mays 0 364 72 85 0 (0) S
Zm00001eb272360_P001 agpv5 Zea mays 0 366 72 85 0 (0) S
v1_GRMZM2G158136_P01 4a53 Zea mays 0 389 70 84 56 (56) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_14(1) AAA_16(1) AAA_17(1) AAA_18(1) AAA_19(1) AAA_2(1) AAA_21(2) AAA_
TargetP:	Secreted (Class 2 C0.003; M0.175; S0.887; _0.098)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	403 aa (-cTP 382)
Molecular Weight	44.85 kDA(-cTP )
PI	5.72(-cTP )

Experimental Evidence

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View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1578	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data