PPDB

 The Plant Proteome Database

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AT5G53530.1   vacuolar protein sorting 26A
Lab Annot. vacuolar protein sorting-associated protein 26, putative / VPS26
Mapman: 29.3.4.3 protein.targeting.secretory pathway.vacuole
Curated Location vacuole
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G27690.1 11Arabidopsis thaliana030291957 (1)_
AT4G27690.2 11Arabidopsis thaliana027390957 (1)_
AT1G48550.1 11Arabidopsis thaliana3E-0727620414 (4)C
Os11g41130.1 6Oryza sativa1E-17829978907 (7)_
Os12g31640.1 6Oryza sativa5E-17830176910 (0)C
Os11g41130.2 7Oryza sativa7E-160262819210 (10)_
Zm00001eb409480_P001 agpv5Zea mays029980920 (0)_
v1_GRMZM2G121948_P01 4a53Zea mays029980900 (0)_
v1_GRMZM2G121948_P02 4a53Zea mays029980900 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Arrestin_C(2) Arrestin_N(3) Vps26(1)
TargetP: Cytoplasm (Class 3 C0.187; M0.157; S0.147; _0.607)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 302 aa (-cTP 282)
Molecular Weight 35.15 kDA(-cTP )
PI 7.67(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help