PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G53486.1   transmembrane protein

Lab Annot.
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G53486.3 11Arabidopsis thaliana3E-548597970 (0)S
AT5G53486.4 11Arabidopsis thaliana3E-5310481810 (0)S
AT5G53486.5 11Arabidopsis thaliana2E-426696980 (0)_
Zm00001eb342500_P001 agpv5Zea mays4E-067534540 (0)S
v1_GRMZM2G410352_P02 4a53Zea mays4E-067534540 (0)S
GRMZM2G410352_P02 3.21Zea mays4E-067534540 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Secreted (Class 1 C0.009; M0.015; S0.995; _0.042)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 85 aa (-cTP 46)
Molecular Weight 9.40 kDA(-cTP )
PI 8.85(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help