PPDB

The Plant Proteome Database

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AT5G53400.1   HSP20-like chaperones superfamily protein

Lab Annot. nuclear movement protein
Mapman: 31.1 cell.organisation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G27890.1 11Arabidopsis thaliana3E-13431766780 (0)_
AT2G27280.1 11Arabidopsis thaliana3E-126152730 (0)_
AT5G58740.1 11Arabidopsis thaliana8E-1215825460 (0)_
Os06g12530.1 7Oryza sativa2E-9631751646 (6)_
Os02g51000.1 7Oryza sativa7E-4428038540 (0)_
Os01g47770.1 7Oryza sativa2E-1315827460 (0)_
GRMZM2G168119_P01 3.21Zea mays6E-10331752664 (4)_
v1_GRMZM2G168119_P01 4a53Zea mays6E-10331752662 (2)_
Zm00001eb279760_P002 agpv5Zea mays6E-10331752660 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CS(1) DUF2390(1) DUF4703(1) Nudc_N(1) Sec62(2)
TargetP: Cytoplasm (Class 5 C0.471; M0.095; S0.114; _0.623)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 304 aa (-cTP 282)
Molecular Weight 34.51 kDA(-cTP )
PI 5.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help