PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G53170.1   FTSH protease 11
Lab Annot. FTSH11
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41
Curated Location envelope (Pubmed: 23198870 27479913 )

TAIR curated location: mitochondrion & chloroplast14630971,14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G26140.1 11Arabidopsis thaliana0598537112 (12)M
AT5G15250.1 11Arabidopsis thaliana2E-13946950651 (1)C
AT2G30950.2 11Arabidopsis thaliana4E-13445350650 (0)C
Os01g43150.1 7Oryza sativa0658808911 (11)C
Os01g39260.1 7Oryza sativa063151682 (2)M
Os01g39250.1 7Oryza sativa063449660 (0)M
GRMZM2G004040_P01 3.21Zea mays0646809125 (25)C
Zm00001eb358380_P001 agpv5Zea mays064680910 (0)C
v1_GRMZM2G004040_P01 4a53Zea mays064680918 (8)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_14(1) AAA_16(3) AAA_17(1) AAA_18(1) AAA_22(2) AAA_28(1) AAA_33(1) AAA
TargetP: Chloroplast (Class 2 C0.919; M0.145; S0.008; _0.010)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 806 aa (-cTP 743)
Molecular Weight 88.72 kDA(-cTP 81.63)
PI 5.80(-cTP 5.44)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1331Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1744Detail        [A. thaliana] Mep-6
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
16618929(MITO/PLASTID-LOPIT-callus)
18431481(chloroplast)
19995728(proplastid (Brassica napus))
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help