PPDB

PPDB	The Plant Proteome Database

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AT5G52850.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G13650.1 11 Arabidopsis thaliana 5E-144 857 30 52 1 (1) _
AT3G63370.1 11 Arabidopsis thaliana 2E-142 861 31 52 0 (0) C
AT3G03580.1 11 Arabidopsis thaliana 1E-134 858 29 51 0 (0) C
Os04g39410.1 7 Oryza sativa 8E-148 869 31 52 0 (0) M
Os12g36620.1 7 Oryza sativa 8E-146 843 32 52 0 (0) _
Os03g64370.1 7 Oryza sativa 3E-134 612 37 57 0 (0) M
v1_GRMZM2G153275_P01 4a53 Zea mays 1E-155 896 31 52 0 (0) _
v1_GRMZM2G153275_P02 4a53 Zea mays 1E-155 896 31 52 0 (0) _
GRMZM2G153275_P01 3.21 Zea mays 1E-155 896 31 52 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DYW_deaminase(1) PPR(14) PPR_1(17) PPR_2(13) PPR_3(11) PPR_long(6) PSII_Pbs27(1)
TargetP:	Chloroplast (Class 5 C0.593; M0.079; S0.422; _0.031)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	893 aa (-cTP 887)
Molecular Weight	98.84 kDA(-cTP 98.19)
PI	8.12(-cTP 8.00)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

15276459(epidermis)

Comparative Proteomics Data