PPDB

PPDB	The Plant Proteome Database

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AT5G52470.2 fibrillarin 1

Lab Annot.

fibrillarin 1 (FBR1) (FIB1) (SKIP7)
Mapman: 27.4 RNA.RNA binding

Curated Location

nucleus (Pubmed: 15827145 10829025 10806224 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G52470.1 11 Arabidopsis thaliana 8E-161 226 100 100 78 (60) M
AT4G25630.1 11 Arabidopsis thaliana 4E-115 164 99 99 60 (48) M
AT5G52490.1 11 Arabidopsis thaliana 2E-93 166 80 87 0 (0) M
Os02g57590.3 6 Oryza sativa 3E-105 166 89 93 0 (0) M
Os02g57590.2 7 Oryza sativa 4E-105 172 86 91 0 (0) M
Os02g57590.1 7 Oryza sativa 4E-104 164 89 94 15 (15) M
v1_GRMZM2G150648_P05 4a53 Zea mays 1E-103 164 87 94 99 (99) _
GRMZM2G150648_P05 3.21 Zea mays 1E-103 164 87 94 91 (51) _
Zm00001eb191090_P006 agpv5 Zea mays 4E-100 157 87 94 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Fibrillarin(1) FtsJ(1) GCD14(1) Methyltr_RsmB-F(1) PCMT(1)
TargetP:	Mitochondria (Class 5 C0.144; M0.486; S0.006; _0.461)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	273 aa (-cTP 213)
Molecular Weight	29.21 kDA(-cTP )
PI	10.12(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1535	Detail								leaf [A. thaliana]		wild-type
1620	Detail								[A. thaliana]		m48
1699	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
1716	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
2236	Detail								seedlings [A. thaliana]	total tissue	gfs9
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2244	Detail								seedlings [A. thaliana]	total tissue	gfs9
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17432890(leaf total membranes)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data