PPDB

 The Plant Proteome Database

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AT5G52420.1   transmembrane protein
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G23920.1 11Arabidopsis thaliana1E-50201426219 (17)_
AT1G27990.1 11Arabidopsis thaliana7E-3520235541 (0)_
Os10g40040.1 7Oryza sativa1E-4222740530 (0)_
Os04g31710.1 7Oryza sativa9E-3024933480 (0)_
v1_GRMZM2G304132_P01 4a53Zea mays3E-3621342560 (0)_
GRMZM2G304132_P01 3.21Zea mays3E-3621342560 (0)_
Zm00001eb421070_P001 agpv5Zea mays5E-3324133510 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ATP-synt_A(2)
TargetP: Cytoplasm (Class 1 C0.038; M0.049; S0.015; _0.965)
Predotar:
Subcel. Location:
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 242 aa (-cTP 187)
Molecular Weight 26.74 kDA(-cTP )
PI 6.31(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
2247Detail       seedlings [A. thaliana] total tissue atg5
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(ER-LOPIT-callus)
18436743(specific to roots)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help