PPDB

PPDB	The Plant Proteome Database

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AT5G52410.1 oxidoreductase/transition metal ion-binding protein

Lab Annot.

unknown protein
Mapman: 35.2 not assigned.unknown

Curated Location

envelope (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G52410.3 11 Arabidopsis thaliana 0 510 100 100 0 (0) C
AT5G52410.2 11 Arabidopsis thaliana 0 510 100 100 14 (14) C
AT5G23890.2 11 Arabidopsis thaliana 0 514 58 75 0 (0) _
Os03g64400.4 7 Oryza sativa 0 508 54 72 9 (9) _
Os03g64400.2 7 Oryza sativa 0 508 54 72 16 (16) _
Os03g64400.1 7 Oryza sativa 7E-178 508 54 72 16 (16) M
Zm00001eb065340_P001 agpv5 Zea mays 1E-170 511 54 72 0 (0) C
Zm00001eb065340_P002 agpv5 Zea mays 1E-170 511 54 72 0 (0) C
GRMZM2G077222_P01 3.21 Zea mays 1E-170 511 54 72 152 (150) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF5113(2) DUF5132(2) FlxA(2) SLH(3) Spc7(2)
TargetP:	Cytoplasm (Class 5 C0.083; M0.264; S0.114; _0.438)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	1 TMs
TAT position:
Length	510 aa (-cTP 478)
Molecular Weight	57.80 kDA(-cTP )
PI	5.29(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1829	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1 Fluctuating light
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data