PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G52110.1   chaperone (DUF2930)

Lab Annot. CCB2 Protein - HCF208 ; cytochrome b6 heme biogenesis
Mapman: 29.8 protein.protein assembly and cofactor ligation; 1.1.9* PS.lightreaction.biogenesis
Curated Location thylakoid-integral (Pubmed: 23198870 18593701 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G52110.2 11Arabidopsis thaliana02751001004 (4)C
Os10g37840.2 7Oryza sativa2E-8423552720 (0)C
Os10g37840.7 7Oryza sativa2E-8423552720 (0)C
Os10g37840.3 7Oryza sativa1E-6717456770 (0)C
GRMZM2G087063_P02 3.21Zea mays1E-8626351690 (0)M
v1_GRMZM2G087063_P02 4a53Zea mays1E-8626351691 (1)M
v1_GRMZM2G087063_P04 4a53Zea mays1E-8626351691 (1)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CCB2_CCB4(1)
TargetP: Chloroplast (Class 3 C0.746; M0.268; S0.010; _0.067)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 275 aa (-cTP 256)
Molecular Weight 30.61 kDA(-cTP 28.35)
PI 6.33(-cTP 5.52)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help