PPDB

PPDB	The Plant Proteome Database

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AT5G52040.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

ATRSP41 (arginine/serine-rich splicing factor 41); RNA binding
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G52040.2 11 Arabidopsis thaliana 0 357 99 99 12 (10) _
AT5G52040.6 11 Arabidopsis thaliana 0 321 100 100 0 (0) _
AT5G52040.3 11 Arabidopsis thaliana 0 320 100 100 10 (10) _
Os02g03040.1 7 Oryza sativa 2E-113 310 62 70 0 (0) _
Os02g03040.2 7 Oryza sativa 1E-110 295 63 71 0 (0) _
Os02g03040.4 7 Oryza sativa 6E-91 276 61 68 0 (0) _
Zm00001eb230540_P001 agpv5 Zea mays 4E-103 305 59 69 0 (0) _
GRMZM5G872147_P02 3.21 Zea mays 4E-103 305 59 69 20 (19) _
Zm00001eb208490_P004 agpv5 Zea mays 6E-100 237 67 78 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DbpA(2) DUF2129(2) Nup35_RRM_2(2) RNA_bind(2) RRM_1(2) RRM_3(2) RRM_5(2)
TargetP:	Cytoplasm (Class 2 C0.031; M0.174; S0.061; _0.942)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	356 aa (-cTP 326)
Molecular Weight	41.28 kDA(-cTP )
PI	10.32(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1748	Detail								leaf [A. thaliana]	total leaf tissue	Col_0
1756	Detail								leaf [A. thaliana]	total leaf tissue	Col_0
1757	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin
1930	Detail								leaf [A. thaliana]	total leaf tissue	Col_0 Wild-type
1931	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1932	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
20166762(guard cells (Arabidopsis))
20516081(tagged-26S proteasome-affinity)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data