PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G51660.1 cleavage and polyadenylation specificity factor 160

Lab Annot.

cleavage and polyadenylation specificity factor 160
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G51660.2 11 Arabidopsis thaliana 0 1303 99 99 0 (0) _
AT5G51660.3 11 Arabidopsis thaliana 0 1303 99 99 0 (0) _
AT5G51660.4 11 Arabidopsis thaliana 0 1225 99 100 0 (0) _
Os04g18010.1 7 Oryza sativa 0 515 59 74 4 (4) _
Os04g18010.2 7 Oryza sativa 2E-155 363 65 78 1 (1) _
Os04g18010.3 7 Oryza sativa 8E-96 248 65 77 0 (0) _
Zm00001eb086790_P001 agpv5 Zea mays 0 1459 62 76 0 (0) _
Zm00001eb086790_P002 agpv5 Zea mays 0 1459 62 76 0 (0) _
Zm00001eb086790_P003 agpv5 Zea mays 0 1459 62 76 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CPSF_A(1) MMS1_N(2)
TargetP:	Cytoplasm (Class 2 C0.042; M0.145; S0.143; _0.810)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1442 aa (-cTP 1436)
Molecular Weight	158.07 kDA(-cTP )
PI	5.74(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1467	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 2)
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2286	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data