PPDB

PPDB	The Plant Proteome Database

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AT5G51300.1 splicing factor-like protein

Lab Annot.

splicing factor-related
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G51300.2 11 Arabidopsis thaliana 0 804 100 100 3 (3) _
AT5G51300.3 11 Arabidopsis thaliana 0 804 100 100 3 (3) _
AT1G09660.3 11 Arabidopsis thaliana 6E-26 133 46 66 0 (0) _
Os04g31620.1 7 Oryza sativa 5E-54 443 43 51 0 (0) _
Os01g66300.1 7 Oryza sativa 3E-26 137 45 64 0 (0) C
Os05g34670.1 7 Oryza sativa 4E-25 123 45 67 0 (0) C
Zm00001eb085570_P001 agpv5 Zea mays 0 498 71 79 0 (0) C
GRMZM2G000980_P01 3.21 Zea mays 0 498 71 79 0 (0) C
v1_GRMZM2G000980_P01 4a53 Zea mays 0 498 71 79 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	eIF3g(2) KH_1(1) PHD_4(1) RRM_1(1) RRM_5(1) SF1-HH(1) zf-CCHC(2) zf-CCHC_2(2) zf
TargetP:	Cytoplasm (Class 5 C0.541; M0.047; S0.016; _0.659)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	804 aa (-cTP 750)
Molecular Weight	87.05 kDA(-cTP )
PI	5.88(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data