PPDB

PPDB	The Plant Proteome Database

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AT5G51280.1 DEAD-box protein abstrakt

Lab Annot.

DEAD box RNA helicase (RH35)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G33370.1 11 Arabidopsis thaliana 0 587 80 85 0 (0) _
AT1G55150.1 11 Arabidopsis thaliana 1E-99 416 39 60 20 (0) _
AT1G55150.2 11 Arabidopsis thaliana 4E-99 416 39 60 0 (0) _
Os02g05660.1 7 Oryza sativa 0 598 74 86 0 (0) _
Os06g48210.1 7 Oryza sativa 0 599 70 83 0 (0) _
Os01g10050.1 7 Oryza sativa 1E-100 417 41 60 4 (4) M
Zm00001eb394960_P002 agpv5 Zea mays 0 601 75 87 0 (0) C
GRMZM2G043724_P01 3.21 Zea mays 0 601 75 87 0 (0) C
v1_GRMZM2G043724_P01 4a53 Zea mays 0 601 75 87 15 (15) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DEAD(2) Helicase_C(1) PIN_3(2) ResIII(1) SecA_DEAD(1) UTP25(2) zf-CCHC(1)
TargetP:	Cytoplasm (Class 2 C0.131; M0.060; S0.122; _0.833)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	591 aa (-cTP 575)
Molecular Weight	65.81 kDA(-cTP )
PI	6.25(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1712	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1715	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k5-1
2275	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data