PPDB

 The Plant Proteome Database

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AT5G51120.1   polyadenylate-binding protein 1
Lab Annot. RRM domain protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G51120.2 11Arabidopsis thaliana5E-156265848415 (8)_
AT5G51120.3 11Arabidopsis thaliana1E-991381001001 (0)_
AT5G10350.1 11Arabidopsis thaliana6E-9222763741 (1)_
Os02g52140.2 7Oryza sativa2E-91232627317 (17)_
Os02g52140.1 7Oryza sativa1E-90235617217 (17)_
Os06g11620.1 7Oryza sativa2E-75210617312 (12)_
Zm00001eb255450_P001 agpv5Zea mays5E-9123262740 (0)_
GRMZM5G862331_P04 3.21Zea mays5E-9123262749 (9)_
v1_GRMZM2G108919_P01 4a53Zea mays7E-8723360728 (8)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: RRM_1(1) RRM_occluded(2)
TargetP: Cytoplasm (Class 2 C0.133; M0.113; S0.096; _0.887)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 227 aa (-cTP 210)
Molecular Weight 25.67 kDA(-cTP )
PI 4.85(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2214Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2237Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2262Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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