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AT5G51110.1 Transcriptional coactivator/pterin dehydratase

Lab Annot.

Rubisco assembly factor 2 (RAF2)
Mapman: 1.3.20* PS.calvin cycle.biogenesis

Curated Location

plastid stroma (Pubmed: 23198870 18431481 29396988 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G51110.2 11 Arabidopsis thaliana 4E-136 220 87 87 196 (115) C
AT1G29810.2 11 Arabidopsis thaliana 9E-24 124 37 61 0 (0) C
AT1G29810.1 11 Arabidopsis thaliana 3E-23 124 37 61 16 (5) M
ChrSy.fgenesh.mRNA.86 7 Oryza sativa 3E-56 165 53 72 0 (0)
Os01g47420.3 7 Oryza sativa 1E-18 120 35 57 8 (8) _
Os01g47420.2 7 Oryza sativa 5E-18 120 35 57 8 (8) M
Zm00001eb063250_P001 agpv5 Zea mays 1E-53 173 53 67 0 (0) C
GRMZM2G139123_P01 3.21 Zea mays 1E-53 173 53 67 54 (48) C
v1_GRMZM2G139123_P01 4a53 Zea mays 1E-53 173 53 67 48 (48) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Pterin_4a(1)
TargetP:	Chloroplast (Class 2 C0.827; M0.159; S0.021; _0.033)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	220 aa (-cTP 170)
Molecular Weight	23.90 kDA(-cTP 18.52)
PI	9.06(-cTP 5.92)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
180_181	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
187_188	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
272	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
327	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
352	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
355	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
356	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
420	Detail								leaf [A. thaliana]	chloroplast stroma	clpR1-stop (EMS)
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
618	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1180	Detail								leaf [A. thaliana]	co-IP OEC23 stroma	clpr2-1
1202	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1410	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	wild-type
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1413	Detail								leaf [A. thaliana]	total leaf tissue -114 rep1tR1	wild-type
1414	Detail								leaf [A. thaliana]	total leaf tissue -114 rep1tR2	wild-type
1415	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.1	clpr2-1
1416	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.2	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1455	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1456	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1457	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1458	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 1)
1459	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 2)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1463	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 3)
1465	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 1)
1467	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 2)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1511	Detail								[A. thaliana]
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1572	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1596	Detail								[A. thaliana]
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1870	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1871	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1873	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1874	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1876	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1999	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2001	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2002	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2043	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2044	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2045	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2046	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2047	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2048	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2049	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2050	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2051	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2052	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2054	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2065	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2068	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2072	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2073	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2077	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2078	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2080	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2081	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2084	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2085	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2086	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2116	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2141	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2142	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2143	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2144	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2145	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2146	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2147	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2149	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2150	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2151	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2152	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2267	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 TRAP
2285	Detail								[A. thaliana]		Clp C1 TRAP
2287	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2314	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2317	Detail								leaf [A. thaliana]	PG plastoglobule
2319	Detail								leaf [A. thaliana]	PG plastoglobule
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19423572(leaf (wt and clpr2-1))
19995723(chloroplast reference proteome)
21693672(wound-regulated leaf proteome (wt))
21515685(GreenCut2)

Comparative Proteomics Data